#!/usr/bin/bash

### input parameters
## sample name
sample=$1
## genome size
size=$2

### Steps
## assembly by SOAPdenovo_LR
SOAPdenovo_LR-127mer_debug sparse_pregraph -s bin/lib.cfg -d 2 -K 69  -R -o ${sample} -p 32 -z ${size}
SOAPdenovo_LR-127mer_debug contig -g ${sample} -D 1 -R -p 32
